How to use heatmap.2 Function from the gplots Package In R Language

R




# install.packages("gplots")
library(gplots)
 
# Generate random data for the heatmap
data <- matrix(runif(25), nrow=5)
 
# Create a heatmap using heatmap.2
heatmap.2(data, col=cm.colors(256), main="Random Data Heatmap",
          xlab="X-axis", ylab="Y-axis")


Output:

Adding a Dendrogram to a ggplot2 Heatmap in R

In this example, we load the gplots package, generate random data, and create a heatmap using the more flexible heatmap.2 function. Like the previous example, we specify the color palette with col and add labels and a title.

Adding a Dendrogram to a ggplot2 Heatmap in R

A potent technique that improves the visualisation of hierarchical clustering patterns inside data is to add a dendrogram to a ggplot2 heatmap in R. Dendrograms shed light on the connections and resemblances among data points, assisting in the discovery of distinct clusters or groups. We will examine how to combine dendrograms with ggplot2 heatmaps using R in this article, enabling a more thorough comprehension of intricate data structures and patterns.

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Heatmap

A heatmap is a graphical representation of data in which each value is represented by a different colour. It’s very helpful for analysing complicated data sets and spotting trends or correlations between variables. Large datasets may be interpreted and analysed more easily because each cell in the heatmap represents a data point and is coloured according to its value....

Dendrogram

A dendrogram is a tree-like diagram used in hierarchical clustering to represent the arrangement of data points based on their similarity or dissimilarity. Dendrograms are often displayed alongside heatmaps to help visualize how data points cluster together....

Applications of Dendrograms:

Genetics: Dendrograms are widely used in genetics to analyze DNA sequences and determine evolutionary relationships between species or individuals....

Using heatmap Function:

R # Generate random data for the heatmap data <- matrix(runif(25), nrow=5)   # Create a heatmap heatmap(data, col=cm.colors(256), main="Random Data Heatmap",         xlab="X-axis", ylab="Y-axis")...

Using heatmap.2 Function from the gplots Package:

...

Using Dendextend Library

R # install.packages("gplots") library(gplots)   # Generate random data for the heatmap data <- matrix(runif(25), nrow=5)   # Create a heatmap using heatmap.2 heatmap.2(data, col=cm.colors(256), main="Random Data Heatmap",           xlab="X-axis", ylab="Y-axis")...

Conclusion

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